PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00056398-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB_related
Protein Properties Length: 386aa    MW: 42578.2 Da    PI: 4.8011
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00056398-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding262.2e-0816382346
                      -HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqk 46
                      +W++Ia+ ++ gRt++++k++w++
  PSME_00056398-RA 16 RWSLIAAQLP-GRTDNELKNYWNS 38
                      5*********.***********95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.138144IPR017930Myb domain
CDDcd001676.84E-61437No hitNo description
SuperFamilySSF466891.55E-61445IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.4E-111544IPR009057Homeodomain-like
PfamPF002491.1E-51538IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MDDCVNDKQS NAVFGRWSLI AAQLPGRTDN ELKNYWNSRI KKKLELKQNL SCSSSNCNAE  60
TKAQIPSRSK TNSVSIHAHH VFTSSRSSQQ CMDVLPEGSE PPNNAFNVVT SGENLLCVPG  120
VMDLNHIEIQ DQSDHEFLID PDSTNNQQIC YPNLWTNATS LQIHESFSCP AAFISPSVHA  180
NSSTCNQLTI ESCRTAVAPC FADFSIGSTG INVPALVESD SSKEKLEIDE NHITIGYSNA  240
TDSFQVVHPR KYTSSEAEIS ILKKCLNLYE DTTHQSYPAL DPQIQFSWPA NMFSAIHSED  300
SGGYLNLSSD VNLGVPTYID NSTRFKTFVL PHIEEAIKAN PIPTLLGPGK RNGQLGTECT  360
GEAGQFTTWA HHDMYNINDV DQIDLT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65790.19e-12myb domain protein 68